Workflows are a great tool. They are quite simple to create, even non-programmers can actually create them and they are flexible. However, there are some problems with workflows in CRM 3 (how workflows are handled in Titan/CRM 4 will be interesting to see) for instance, a workflow cannot be activated when an entity is updated, only when it is created, when it changes status, when it changes owner and of course, manually.
A bit of caution is however advised. I would actually prefer to have the workflow being activated by a PostUpdate-callout instead, to make sure that it is only run once. Activating a workflow on the on-change event can be a bit hazardous since it is very possible that the event is triggered several times on the same form before it has been saved.
Never the less, it is a good posting and can probably give you an idea or two about how to programmatically activate CRM workflows. If I wasn't block from using my own virtual directory or website with my own aspx-files, I would also prefer to trigger the workflow from an aspx-page and call the aspx-page using AJAX. Have a look at the class ExecuteWFProcessRequest in the CRMSDK as it enables you to execute a workflow using the web service.